qtlSumm             package:MetaNetwork             R Documentation

_E_x_a_m_p_l_e _Q_T_L _s_u_m_m_a_r_y _r_e_p_o_r_t

_D_e_s_c_r_i_p_t_i_o_n:

     Example of the QTL summary for each trait as data frame that can
     be produced  by functions 'qtlSummary' or 'MetaNetwork'.


     > data(qtlSumm)
     > qtlSumm[1:5,]

          traitName              QTLchr    QTLmk  QTLleftcm  QTLpeakcm  QTLrightcm  logP
       1  3-Hydroxypropyl             4      GA1     3.6640      9.027     11.1280  11.1
       2  3-Hydroxypropyl             5  GH.117C    32.4675     35.356     37.6390  13.5
       3  4-Hydroxybutyl              3   DF.77C     0.0000      0.000      9.4365   3.9
       4  4-Hydroxybutyl              4      GA1     3.6640      9.027     16.5810   4.5
       5  4-Methylsulfinylbutyl       5  GH.117C     32.356     35.356     37/6390  16.3


       (cont'd)    VarP1  VarP2  additive
       (1 cont'd)    0.0   26.0   -2784.0
       (2 cont'd)    0.0   31.2   -3088.8
       (3 cont'd)   10.4    1.3     -16.9
       (4 cont'd)    5.5    6.6      28.0
       (5 cont'd)   12.0   34.2      61.3

_U_s_a_g_e:

     data(qtlSumm)

_F_o_r_m_a_t:

     A data frame.

_A_u_t_h_o_r(_s):

     Jingyuan Fu <j.fu@rug.nl>,  Morris Swertz <m.a.swertz@rug.nl>, 
     Ritsert Jansen <r.c.jansen@rug.nl>

_S_o_u_r_c_e:

     Keurentjes JJB, FU J, de vos CHR, Lommen A, Hall RD, Bino RJ, van
     der Plas LHW, Jansen RC, Vreugdenhil D and Koornneef M. The
     genetics of plant metabolism. Nature Genetics (2006) 7: 842-849.

_R_e_f_e_r_e_n_c_e_s:

     Fu J, Swertz MA, Keurentjes JJB, Jansen RC. MetaNetwork: a
     computational tool for the  genetic study of metabolism. Nature
     Protocols (2007). 

     <URL: http://gbic.biol.rug.nl/supplementary/2007/MetaNetwork>

_S_e_e _A_l_s_o:

     Use 'qtlSummary' to generate 'qtlSumm'.
      Use 'MetaNetwork' to produce this dataset as part a genetic 
     analysis protocol on metabolites.

