Folder “correlationMatrices/”:
Correlation matrices for all 145 CD4 + T cell cis-eQTL genes compared to the 7,975 genes with variance in gene expression within each individual.
Each file represents an eQTL gene, the columns inside these files represent the 45 individuals and rows the correlated genes (Spearman correlation).

Folder “permutations/”:
This directory contains the p-values of the permutation for each eQTL gene. Each file represents an eQTL gene, the rows represent the interaction
genes and the columns the 100 permutations.

interaction_matrix_R_values.txt:
Interaction table including the correlation coefficients yielded by the interaction analysis between the 102 eQTL genes and the 7,975 genes. The
analysis was restricted to those genes that show variance in gene expression within each individual. Columns represent the eQTL genes and rows the
interaction genes.

interaction_matrix_P_values.txt:
Table containing the p-values corresponding to the correlation coefficients of interaction_matrix_R_values.txt.

nonImputed_pval_perm_matrix.txt:
Table including the most significant p-value results for each of the 100 permutations. The first column contains the p-value of the most significant
interaction of the real analysis, where every row is an interaction gene. The other columns represent the most significant interaction of each
permutation. Every column is sorted by p-value and the row names therefore only correspond to the first column, of the real analysis.
