Package: Biostrings
Title: String objects representing biological sequences, and matching
        algorithms
Description: Memory efficient string containers, string matching
        algorithms, and other utilities, for fast manipulation of large
        biological sequences or sets of sequences.
Version: 2.20.4
Author: H. Pages, P. Aboyoun, R. Gentleman, and S. DebRoy
Maintainer: H. Pages <hpages@fhcrc.org>
biocViews: SequenceMatching, Genetics, Sequencing, Infrastructure,
        DataImport, DataRepresentation
Depends: R (>= 2.8.0), methods, IRanges (>= 1.10.2)
Imports: graphics, methods, stats, utils, IRanges
LinkingTo: IRanges
Enhances: Rmpi
Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
        1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
        drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures
        (>= 1.3.14), hgu95av2cdf, affy, affydata (>= 1.11.5), RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R
        GENETIC_CODE.R XStringCodec-class.R xsbasetype.R
        XString-class.R XStringSet-class.R XStringViews-class.R
        XStringViews-constructor.R MaskedXString-class.R
        XStringSetList-class.R xscat.R FASTA-io-legacy.R
        XStringSet-io.R letter.R letterFrequency.R
        dinucleotideFrequencyTest.R chartr.R reverse.R translate.R
        toComplex.R replaceLetterAt.R injectHardMask.R misc.R
        SparseList-class.R MIndex-class.R lowlevel-matching.R
        match-utils.R matchPattern.R maskMotif.R matchPattern.BOC.R
        matchPattern.BOC2.R matchLRPatterns.R trimLRPatterns.R
        matchProbePair.R matchPWM.R XKeySortedData-class.R
        XKeySortedDataList-class.R WCP-class.R matchWCP.R
        findPalindromes.R PDict-class.R matchPDict.R
        XStringPartialMatches-class.R XStringQuality-class.R
        QualityScaledXStringSet.R InDel-class.R
        AlignedXStringSet-class.R PairwiseAlignedXStringSet-class.R
        PairwiseAlignedFixedSubject-class.R align-utils.R
        pmatchPattern.R pairwiseAlignment.R stringDist.R needwunsQS.R
        matchprobes.R debug.R test.R zzz.R MultipleAlignment.R
Packaged: 2011-09-27 16:23:50 UTC; biocbuild
Built: R 2.13.1; x86_64-unknown-linux-gnu; 2011-11-09 10:24:14 UTC; unix
