Package: IRanges
Title: Infrastructure for manipulating intervals on sequences
Description: The package provides efficient low-level and highly
        reusable S4 classes for storing ranges of integers, RLE vectors
        (Run-Length Encoding), and, more generally, data that can be
        organized sequentially (formally defined as Vector objects), as
        well as views on these Vector objects. Efficient list-like
        classes are also provided for storing big collections of
        instances of the basic classes. All classes in the package use
        consistent naming and share the same rich and consistent
        "Vector API" as much as possible.
Version: 1.10.6
Author: H. Pages, P. Aboyoun and M. Lawrence
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
biocViews: Infrastructure, DataRepresentation
Depends: R (>= 2.8.0), methods, utils, stats
Imports: methods, utils, stats
Suggests: RUnit
License: Artistic-2.0
ExtraLicenses: The following files in the 'src' directory are licensed
        for all use by Jim Kent, in a manner compatible with the
        Artistic 2.0 license: common.c/h, memalloc.c/h, localmem.c/h,
        hash.c/h, errabort.c/h, rbTree.c/h, dlist.c/h, errCatch.h
Collate: validity-utils.R utils.R isConstant.R int-utils.R str-utils.R
        compact_bitvector.R endoapply.R runstat.R Annotated-class.R
        Vector-class.R List-class.R AtomicList-class.R Ranges-class.R
        Ranges-comparison.R Ranges-utils.R IRanges-class.R
        IRanges-constructor.R IRanges-utils.R IRanges-setops.R
        DataTable-API.R DataTable-stats.R Views-class.R
        Grouping-class.R SimpleList-class.R CompressedList-class.R
        Rle-class.R RleViews-class.R RleViews-utils.R AtomicList-impl.R
        Binning-class.R DataFrame-class.R DataFrame-utils.R
        DataFrameList-class.R DataFrameList-utils.R RangesList-class.R
        GappedRanges-class.R RleViewsList-class.R RleViewsList-utils.R
        MaskCollection-class.R RangedData-class.R FilterRules-class.R
        RDApplyParams-class.R RangedData-utils.R RangesMatching-class.R
        RangesMatchingList-class.R IntervalTree-class.R
        IntervalTree-utils.R RangedSelection-class.R read.Mask.R
        SharedVector-class.R SharedRaw-class.R SharedInteger-class.R
        SharedDouble-class.R XVector-class.R XRaw-class.R
        XInteger-class.R XDouble-class.R XVectorList-class.R
        XRawList-class.R XIntegerViews-class.R XIntegerViews-utils.R
        compact.R reverse.R coverage.R test_IRanges_package.R
        updateObject.R debug.R zzz.R
Packaged: 2011-08-17 16:21:17 UTC; biocbuild
Built: R 2.13.1; x86_64-unknown-linux-gnu; 2011-11-09 10:23:30 UTC; unix
