Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently store genomic annotations and
        alignments is playing a central role when it comes to analyze
        high-throughput sequencing data (a.k.a. NGS data). The package
        defines general purpose containers for storing genomic
        intervals as well as more specialized containers for storing
        alignments against a reference genome.
Version: 1.4.8
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Annotation
Depends: R (>= 2.8.0), methods, IRanges (>= 1.10.6)
Imports: methods, IRanges
LinkingTo: IRanges
Suggests: RUnit, BSgenome, GenomicFeatures, Rsamtools, EatonEtAlChIPseq
        (>= 0.0.2), leeBamViews, org.Sc.sgd.db,
        BSgenome.Scerevisiae.UCSC.sacCer2
License: Artistic-2.0
Collate: utils.R cigar-utils.R transcript-utils.R seqinfo.R strand.R
        Seqinfo-class.R GenomicRanges-class.R
        GenomicRanges-comparison.R GRanges-class.R GRangesList-class.R
        GRanges-setops.R findOverlaps-methods.R
        GappedAlignments-class.R SummarizedExperiment-class.R
        countGenomicOverlaps-methods.R resolveHits-methods.R
        test_GenomicRanges_package.R zzz.R
Packaged: 2011-08-18 17:45:26 UTC; biocbuild
Built: R 2.13.1; x86_64-unknown-linux-gnu; 2011-11-09 10:24:03 UTC; unix
