<!--

  It is recommended to view this file using a markdown viewer
  or view this readme online: github.com/Molgenis/systemsgenetics/blob/master/Genotype-Harmonizer/README.md

-->
Genotype Harmonizer
================

The Genotype Harmonizer is an easy to use command-line tool that allows harmonization of genotype data 
stored using different file formats with different and potentially unknown strands. 

Linkage disequilibrium (LD) patterns are used to determine the correct strand GC and AT SNPs and by using 
the [Genotype IO](https://github.com/PatrickDeelen/systemsgenetics/tree/master/Genotype-IO) package we can import and export different file format.

Manual: https://github.com/molgenis/systemsgenetics/wiki/Genotype-Harmonizer  
Download: https://github.com/molgenis/systemsgenetics/wiki/Genotype%20Harmonizer%20Download
